Detection, isolation and analysis of rare cells in biological fluids

ABSTRACT

The invention provides a method for isolating or enriching a rare cell from a biological fluid of a mammal employing an antibody that binds a cell-surface antigen of the rare cell. The immobilized antibody is incubated with a sample of biological fluid that includes the rare cells and a plurality of other cells so as to form an antibody-rare cell complex. The complex can be detected or isolated and subsequently analyzed by any of a variety of physical, chemical and genetic techniques.

FIELD OF THE INVENTION

The present invention relates to immunological methods and kits fordetection, capture and isolation of rare cells from biological fluidsfor analysis of their antigenic, phenotypic and genetic characteristics.In particular, the invention provides methods and kits for detection,capture, isolation and analysis of fetal nucleated red blood cells(NRBCs) from maternal blood.

BACKGROUND

The practice of prenatal diagnosis to detect possible chromosomal andgenetic abnormalities of the fetus enables parents and caregivers toinitiate monitoring of predispositions and early treatment of diseasesor conditions. The practice of prenatal diagnosis has been establishedto detect possible chromosomal and genetic abnormalities of the fetus,thus enabling informed decisions by the parents and the care givers.Among various chromosomal abnormalities compatible with life (1)(aneuploidy 21, 18, 13, X, Y), Down syndrome (DS), caused by thepresence of all or part of an extra copy chromosome 21, is the mostcommon genetic cause of mental retardation and the primary reason forwomen seeking prenatal diagnosis (1, 2). Although definitive detectionof chromosomal abnormalities and singe gene disorders is possible bykaryotype analysis of fetal tissues obtained by chorionic villussampling (3), amniocentesis (3, 4) or umbilical cord sampling (5), theseprocedures are highly invasive, require skilled professionals, and areprone to significant risk of fetal loss (up to 1%) and/or maternalcomplications (3-5). Cytogenetic disorders are reportedly occurs inabout 1% of live births, 2% of pregnant women older than 35 years, andin approximately 50% of spontaneous first trimester miscarriage (6). Theincidence of single gene defects in a population of one million livebirths is reportedly about 0.36% (7).

To minimize risks in conditions such as DS, these invasive, butdefinitive, tests are offered to women identified by a set of screeningcriteria as having the highest risk for fetal chromosomal abnormalities.This group generally includes pregnancies with maternal age of 35 yearsof age or older and abnormal responses to ultrasound examinations of thefetus and/or maternal serum marker screening tests performed duringfirst and/or second trimesters of pregnancy (8). The preferred firsttrimester screening, involving quantification from serum of PAPP-A(pregnancy-associated plasma-protein-A), free β-hCG (free β-humanchorionic gonadotrophins), and ultrasound examination of nuchaltranslucency, has DS detection rate of about 90%, but at the expense ofsignificant 5% false positive rate (8). A recent met-analysis of firsttrimester screening studies (9) concluded that in practice theachievable sensitivity might be significantly lower (about 80-84%) thanreported. The problems of poor performance, particularly in light ofscreen-positive rate of 5%, invariably results in high rates ofunnecessary and costly invasive confirmatory testing and thus, increasedrisks to the developing pregnancies.

The apparent limitations have been the primary social, scientific, andeconomic motivations for seeking alternative strategies. The latter hasbeen reinforced by the rise in occurrence of DS, due mainly toincreasing trend in maternal age at pregnancy, without comparableincreases in birth rate (10). The recent guideline by the AmericanCollege of Obstetricians and Gynecologists (ACOG) advising its membersto test all expected mothers for genetic abnormalities (11) is furtherindication of the unmet need for non-invasive technologies that couldsafely lead to specific diagnosis of fetal genetic status. Accordingly,development of non-invasive prenatal diagnostics has become one of themost aggressively contested fields in modern day medicine (12). Thecandidate strategies are expected to encompass all of the advantages ofexisting invasive methods so that they could function as a stand-alonenon-invasive diagnostic test or be used as highly accurate confirmatorytest for analysis of the high numbers of false positives associated withcurrent screening practices (13). The new testing strategies should, inaddition, address analytical, manufacturing, and operationalcomplexities such that the new methods provide a reliable, simple, andcost effective alternative.

For several decades, the search for non-invasive alternatives hasfocused on isolation, identification, and subsequent analysis of fetalgenetic materials that normally cross the placental barrier intomaternal circulation. Since the pioneering reports on detection of fetalcells in 1893 (14) and later of fetal cell-free DNA (15) and RNA (16) inmaternal blood, two promising approaches based on analysis of fetalcells or cell free fetal genetic materials has received tremendousinterest. In comparison to cell-free fetal DNA or RNA, intact fetalcells can provide access to complete fetal genetic materials importantfor detection of chromosomal abnormalities as well as a more completeassessment of fetal genetic status (17). Because of relative increase innumber of fetal cells in pregnancies complicated by chromosomalabnormality or in conditions such as preeclampsia (18), a reliableisolation method would likely lend itself to development of novelnon-invasive diagnostic methods for these conditions based on fetal cellenumeration and/or quantification of the cell detection signal.

A number of significant challenges have hampered development of reliablefetal cell isolation methods. The reported rarity of occurrences atapproximately one to two cells per milliliter (mL) of maternal blood hasbeen considered a formidable barrier to reproducible isolation of fetalcells with sufficient purity and yield (18). A successful cell isolationstrategy would therefore require exceptional efficiency, sensitivity,and specificity. It is possible that the number of fetal cells enteringmaternal circulation is significantly higher than previously believed,as reported numbers have been so far obtained by inefficient multi-steptechnologies that are prone to poor yield and cell loss. Among varietyof candidate fetal cells (19) (trophoblasts, lymphocytes, nucleated redblood cells, and hematopoietic stem cells), nucleated red blood cells(NRBC), known also as erythroblasts, have most of the desiredcharacteristics. Fetal NRBCs have limited life span and proliferativecapacity, are mononucleated, carry a representative complement of fetalchromosomes, and are consistently present in maternal blood (17-20).Studies of fetal erythropoiesis have, however, identified two distinctprocesses, occurring initially in yolk sack (primitive erythropoiesis,producing primitive erythroblasts) and subsequently in fetal liver andbone marrow (producing definitive erythroblasts) (17). Both primitiveand definitive erythroblasts have been detected in maternal circulation,but their exact time of appearance, their relative numbers, anddistribution throughout pregnancy has not been clearly defined. However,while primitive erythroblasts are the predominant first trimester celltype, they are progressively replaced by the definitive type thatpersists until term (17, 20).

Primitive erythroblasts have distinguishing morphological features ofhaving a high cytoplasmic to nuclear ratio, comparatively larger size,and containing an embryonic type of hemoglobin know as ε-globulin (17,20). Collectively, the above characteristics and knowledge ofdifferential expression of various cell surface markers such as clusterof differentiation (CD) markers (CD34, CD35, CD36, CD45, CD 47, CD71),glycophorin-A, and i-antigen (17, 20, 21), has identified primitiveerythroblasts as an ideal first trimester target.

Epsilon-positive erythroblasts in fetal blood decline linearly fromseven weeks, reaching negligible numbers by about 14 weeks of gestation(22). On the other hand, a recent report suggests definitiveerythroblasts are enucleated before entering circulation (17) and ifsubstantiated, then first trimester primitive erythroblasts would remainthe only useful target. Epsilon globulin is reportedly a highly specificprimitive fetal erythroblast identifier (20, 22).

Current approaches to non-invasive prenatal diagnosis has been based onexploiting physical, structural, morphological, and antigenic attributesof target cells and the process has so far engaged three independentsteps (22, 23). These are: (1), development of technologies designed forenrichment of fetal cells from maternal blood (2), identification offetal cells among the heterogeneous mixture of enriched cells and (3),genetic analysis of the identified cells by chromosomal fluorescence insitu hybridization (FISH), various PCR techniques and/or gene sequencingbefore and/or after micromanipulation of the targets (17, 21-23). Inattempts to minimize current complexities, inefficiencies, andinconsistencies approaches that combine fetal cell identification stepwith molecular genetics-based diagnosis have been also considered (22).

Inadequacies of the current fetal cell isolation strategies have beenidentified by a recent review (18) as the major factor limitingdevelopment of a reliable non-invasive prenatal diagnostic method.Currently, the most commonly explored fetal cell enrichments includemulti-step combinations of selective erythrocyte lysis, density gradientcentrifugation, charge flow separation, fluorescent-activated cellsorting (FACS), and magnetic-activated cell sorting (MACS) (18, 23).Newer alternatives include more complex approaches based onmicroelectronic mechanical systems (MEMS) and/or automation of some ofthe current cell enrichment methods in combination with morphologicaldifferences, immunophenotyping and/or micromanipulation of theidentified cells (18, 24-28).

It is now apparent that development of simple, sensitive, and specificfetal cell isolation technology capable of high efficiency andconsistency is an absolute pre-requisite to developing successfulnon-invasive prenatal tests for practical use. The fact that the latterhas not been as yet realized despite availability of downstreamtechnologies (FISH, PCR, and genomic sequencing) for accurate detectionof genetic and chromosomal abnormalities is a reflection of significantinadequacies of the currently available cell isolation methods (17, 18,21, 23).

There remains an urgent need for a novel simple, fast and reliable fetalNRBC isolation technology to overcome this widely acknowledgedformidable obstacle (17, 18, 20-28). Ideally, such a kit that addressesthese needs for detection, isolation and analysis of fetal NRBCs shouldbe cost effective to manufacture, while maintaining high isolationsensitivity, specificity, and consistency.

The present invention provides such a novel simple, fast, and reliablefetal NRBC isolation kit based on a technology that overcomes theseobstacles. The kit can be manufactured cost effectively whilemaintaining high isolation sensitivity, specificity, and consistency.

SUMMARY OF THE INVENTION

The present invention fulfills an unmet urgent need for a reliabletechnology and associated protocols to provide methods for detection,enrichment and isolation of rare cells from biological fluids. Theinvention further provides a system and associated methods that functionas an integral part of a standalone kit for fetal NRBC isolation,identification and subsequent analysis of specific fetal geneticabnormalities or testing for presence of any of a panel of fetal geneticabnormalities and other genotypes of diagnostic interest. The inventionalso addresses unmet needs for reliable rare cell isolation methods inother fields that are currently faced with similar detection andanalysis limitations, such as circulating stem cells and tumor cells.

The invention provides a method of enriching and/or isolating a rarecell from a biological fluid of a mammal; the method includes: (i)providing an antibody immobilized on a substrate, wherein the antibodybinds a cell-surface antigen of the rare cell; (ii) contacting theimmobilized antibody with a sample of biological fluid, wherein thebodily fluid contains the rare cell and a plurality of other cells;(iii) incubating the immobilized antibody with the sample of bodilyfluid under conditions suitable for binding of the antibody to thecell-surface antigen of the rare cell so as to form an antibody-rarecell complex; and (iv) washing the antibody-rare cell complex to removethe unbound cells and provide an immobilized antibody-rare cell complex.

The invention also provides a method of detecting a rare cell in abiological fluid; the method includes: (i) providing a first antibodyimmobilized on a substrate, wherein the first antibody binds a firstcell-surface antigen of the rare cell; (ii) contacting the immobilizedfirst antibody with a sample of biological fluid, wherein the bodilyfluid contains the rare cell and a plurality of other cells; (iii)incubating the immobilized first antibody with the sample of bodilyfluid under conditions suitable for binding of the first antibody to thefirst cell-surface antigen of the rare cell so as to form a firstantibody-rare cell complex; (iv) washing the first antibody-rare cellcomplex to remove the unbound cells and provide an isolated firstantibody-rare cell complex; (v) incubating the first antibody-rare cellcomplex with a second antibody that binds a second cell-surface antigenof the rare cell under conditions suitable for binding of the secondantibody to the a second cell-surface antigen in order to form a firstantibody-rare cell-second antibody complex; and (vi) detecting thesecond antibody in the first antibody-rare cell-second antibody complexand thereby detecting the presence of the rare cell in the sample of thebodily fluid.

The invention further provides a method of detecting a rare cell in abiological fluid; the method includes: (i) providing a first antibodyimmobilized on a substrate, wherein the first antibody binds a firstcell-surface antigen of the rare cell; (ii) contacting the immobilizedfirst antibody with a sample of biological fluid, wherein the bodilyfluid contains the rare cell and a plurality of other cells; (iii)incubating the immobilized first antibody with the sample of bodilyfluid under conditions suitable for binding of the antibody to thecell-surface antigen of the rare cell so as to form a firstantibody-rare cell complex and a plurality of unbound cells; (iv)washing the first antibody-rare cell complex to remove the unboundcells; (v) lysing the rare cells of the first antibody-rare cell complexto form a lysate that contains a rare cell-specific nucleic acidsequence and incubating the lysed cells with a nucleic acid probe thatis complementary to the rare cell-specific nucleic acid sequence underconditions suitable for hybridization of the nucleic acid probe with therare cell-specific nucleic acid sequence in order to form a doublestranded complex; and (vi) detecting the double stranded complex andthereby detecting the presence of the rare cell in the sample of thebodily fluid.

The invention also provides a kit for detection or isolation of a rarecell from a biological fluid, such as for instance, a fetal cell frommaternal blood; the kit includes an antibody immobilized on a substratewherein the antibody is specific for a cell-surface antigen of the rarecell; and a buffer solution suitable for antigen antibody binding.

The invention provides a method of estimating the number of rare cellsper unit of a biological fluid of a mammal; the method includes: (i)providing an antibody immobilized on a substrate, wherein the antibodybinds a cell-surface antigen of the rare cell; (ii) contacting theimmobilized antibody with a known unit sample of biological fluid,wherein the bodily fluid contains a plurality of rare cells and aplurality of other cells; (iii) incubating the immobilized antibody withthe unit sample of bodily fluid under conditions suitable for binding ofthe antibody to the cell-surface antigen of the rare cell so as to formantibody-rare cell complexes; (iv) washing the antibody-rare cellcomplexes to remove the unbound cells and provide immobilizedantibody-rare cell complexes; and (v) determining the number ofimmobilized antibody-rare cell complexes in the sample and therebyestimating the number of rare cells per unit of the sample fluid.

BRIEF DESCRIPTION OF THE FIGURES

The application file contains at least one drawing executed in color.Copies of this patent or patent application publication with colordrawing(s) will be provided by the Office upon request and payment ofthe necessary fee.

FIG. 1: Increasing concentrations of biotinylated 4B9 antibody wereincubated under identical conditions for 30 mins with streptavidincoated magnetic particles (from Invitrogen Biotin binder, CELLECTIN, andFlowComp kits), dextran-coated nanoparticles (provided in StemCelltechnologies EasySep human biotin positive cell selection kit), andstreptavidin coated microwells (Microwell-SA). After washing, bound 4B9was detected and quantified colorimetrically using HRPO labeled goatanti-mouse IgM antibody.

FIG. 2: The isolated cells were fixed, permeabilized, and probed withAMCA-labeled mouse anti-human ε-globulin antibody. Representative imagesshown were acquired microscopically under bright field (BF),fluorescence field detecting ε-globulin positive responses, and thecomposite merged image.

FIG. 3: The isolated cells were fixed, permeabilized, and probed withAMCA-labeled mouse anti-human epsilon globulin antibody. Representativeimages shown acquired microscopically under bright field (BF),fluorescence field detecting ε-globulin positive responses, and thecomposite merged image.

FIG. 4: The isolated cells were fixed, permeabilized, and probed withAMCA-labeled mouse anti-human epsilon globulin antibody. The cells werethen counter stained with TO-PRO. Representative images shown acquiredmicroscopically under bright field (BF), fluorescence field showingnuclear and ε-globulin positive responses, and the composite mergedimage.

FIG. 5: Fetal NRBC were isolated from maternal blood (5 mL) of aconfirmed 30 weeks gestation male pregnancy using 4B9(O)-coated glassslide. Isolated cells were probed for Y-chromosome (red) andX-chromosome (green), with composite merged image also shown.

FIG. 6: Is an Enlarged composite of the FISH image shown in FIG. 5.

DETAILED DESCRIPTION OF THE INVENTION

Given the well known value of circulating fetal cells as complete sourceof fetal genetic material, there still remains an urgent need for theirreliable and consistent isolation from maternal blood with highsensitivity and specificity. The present invention provides a two-site“sandwich-type” rare cell isolation technology, protocols, and platformscomprising pair-wise combinations of one or more cell capture antibodywith one-or more antibodies for cell detection/identification. Incertain embodiments the sandwich-type cell isolation and analysistechnology of the present invention employs combinations of specificcapture with non-specific detection, combinations of non-specificcapture with specific detection, or any other suitable combinations thatwill be immediately recognized by those skilled in the art. This novel,highly efficient, and reliable technology can be easily configured intostandalone manual rare cell isolation and analysis kits or adapted toautomated applications compatible with routine laboratory use.Accordingly, in one embodiment the invention provides a simple, fast,reliable, and cost effective technology for a seamless single-stepprocess of capture, isolation, and detection (and identification) offetal nucleated red blood cells (NRBC) from maternal blood, and utilityfor non-invasive prenatal diagnosis of fetal genetic abnormalities.

In one embodiment of the methods of the present invention, mousemonoclonal antibody (antibody 4B9) specific for epitopes expressed onplasma membrane of fetal NRBC is coated onto a large-surfaced solidsupport. In certain embodiments of the present invention the solidsupport can be colloidal metal particles (such as colloidal goldparticles), magnetic particles (such as ferrous metal particles), amagnetic plate, magnetic jackets, magnetic rods, polymeric beads,surfaces of medical and mechanical micro devices, surfaces of medicaland mechanical microelectronic devices, and surfaces of medical andmechanical microelectronic sensors. Detection and/or identification ofthe specifically captured fetal NRBC can be accomplished using 4B9antibody labelled with a reporter molecule. Alternatively, 4B9 or one ormore antibodies of similar specificity can be used in any possiblesandwich combinations with one or more antibodies against known or yetto be discovered cell surface and/or internal fetal NRBC identifyingbiomarkers. For example, 4B9 or other anti-fetal NRBC antibodies can becombined as capture or detection antibodies with one or more specific ornon-specific fetal NRBC detection antibody. Such combinations includedetection of 4B9-captured fetal NRBC by appropriately labelled antibodyagainst specific (e.g., fetal epsilon globulin) and/or non-specific(e.g. cell surface glycophorin-A, and/or i-antigen) fetal NRBCbiomarkers. Possible fetal NRBC capture/detection antibody combinationsinclude 4B9/anti-CD36; 4B9/anti-CD71; 4B9/anti-CD47; anti-CD36/4B9;anti-CD71/4B9; anti-CD47/4B9; anti-CD36/anti-CD47; anti-CD36/anti-CD71;anti-CD36/anti-glycophorin-A; anti-CD36/anti-i-antigen. Fetal NRBCdetection/differentiation can also include nuclear stains and can beexpanded to include other suitable sandwich combinations of antibodiesagainst other readily available fetal NRBC differentiating biomarkers.

The invention provides a single-step, continuous, and seamless reliablemethod for detection, isolation and analysis of circulating rare cellsof interest from biological sources, such as, for instance, circulatingfetal nucleated RBCs from maternal blood. Other examples of rare cellsthat can be isolated from biological fluids by methods of the presentinvention include cytotrophoblast cells that can be isolated from asuspension of cells obtained from biopsy samples of chorionic villussampling (CVS); amniocytes from amniotic fluid obtained byamniocentesis; and leukocytes from urine samples, such as from patientssuffering from diseases and conditions e.g. urinary tract infections.

As used herein, a rare cell is a cell that has at least onecharacteristic cellular antigen that is not present in the majority ofthe cellular population in which it is found. Alternatively, the rarecell can have a characteristic antigen that is different from thehomologous antigen in the majority of cells of the cellular populationin which it is found. For instance, characteristic cellular antigen ofthe rare cell can be a cell surface antigen, a cytoplasmic antigen or anuclear antigen. The characteristic antigen of the rare cell can be anantigen of a cellular component not found in the majority of thecellular population, or it can be an antigenic variant of a cellularcomponent found in the cells of the majority of the cellular population.For example, the NRBC antigen bound by antibody 4B9 is not present onmature red blood cells of non-pregnant adults.

The rare cell can be a cancer cell, such as for instance a tumor cell,an adenoma cell, a carcinoma cell or any other cancer cell. The rarecancer cell can be a circulating tumor cell in a blood sample, or a rarecancer cell in a population of normal cells in a biological fluid; thebiological fluid can be any biological fluid including, but not limitedto a suspension of cells originating from a tissue biopsy.

The rare cell can represent one cell in from about 10² to about 10⁴cells, from about 10³ to about 10⁵ cells, from about 10⁴ to about 10⁶cells, from about 10⁵ to about 10⁷ cells, from about 10⁶ to about 10⁸cells, from about 10⁷ to about 10⁹ cells, or even from about 10⁸ toabout 10¹⁰ cells of a cell population in a biological fluid. Thebiological fluid can be any biological fluid, such as for instance andwithout limitation, blood, plasma, or urine; or the biological fluid canbe a suspension of cells obtained from a tissue sample, such as a biopsysample.

As used herein a mammal can be any mammal, such as for instance andwithout limitation, a human or an animal; the animal can be any animal,such as a non-human primate e.g. a chimpanzee, a gorilla or anorangutan; the animal can be a companion animal e.g. a dog or a cat;alternatively, the animal can be a farm animal such as a cow, a sheep, apig or a goat; the animal can also be a zoo animal such as a bear, atiger, or a lion.

In one embodiment of the methods of the present invention, isolation offetal NRBC specifically involves a short (e.g. 30-60 minutes) incubationof maternal blood (5-10 mL) with a cell isolation substrate coated with4B9 antibody. After washing to remove unbound cells, the immobilizedfetal NRBC is incubated for 30-60 minutes with 4B9 antibody labelledwith a suitable detection moiety. Because of high specificity of 4B9antibody for fetal NRBC, the high isolation efficiency of the strategy,and the implemented washing step, the combined detection/identificationof the isolated cells can be readily achieved by using labelled 4B9 or asuitable labelled antibody against other specific or non-specific NRBCidentifiers described above. In addition to allowing for combined fetalNRBC capture, detection, and identification, the technology is alsocompatible with the intended analysis procedures directly on the cellsbound to the isolation substrate, using appropriate and readilyavailable chromosomal, genetic, and molecular tests known to those ofskill in the art.

Alternatively, the high purity and large numbers of the isolated cellsprovide for easy access to single fetal NRBC for micromanipulation orscraping the entire population of captured fetal NRBC from thesolid-phase substrate for downstream genetic and molecular testing. Thisnovel sandwich-type cell capture, detection, identification technologycan be readily used for general application to isolation of any rarecell population from human or animal biological fluids, such as blood,amniotic fluid and urine; and also for isolation of any rare cellpopulation from a suspension of human or animal cells from a biopsy. Thespecifically isolated cells can be used for research, for evaluation ofcell responses to pharmaceutical agents, or for indication of diseasessuch as chromosomal and genetic abnormalities, maternal complications ofpregnancy, and various cancers to name a few. The only requirement isthe availability and/or development of antibodies that selectively orspecifically bind to the intended target cell. An additional adaptationof the present invention is its application as a diagnostic method basedon monitoring changes in circulating numbers of rare cells such as fetalNRBC in relation to occurrences of fetal and/or maternal complications.There are reportedly more fetal cells entering maternal blood inconditions such as Down syndrome (DS) and preeclampsia. Preeclampsia isa pregnancy condition in which high blood pressure and protein in theurine develop after the 20th week (late second or third trimester) ofpregnancy. In such conditions, comparative analysis of relative changesin the number of isolated fetal NRBC per unit of maternal blood obtainedfrom suspected vs. gestation-matched normal pregnancies is useful fordiagnosis and is also of value in predicting onset of these conditions.

Pair-wise combinations of antibodies that react with specific and/ornon-specific fetal NRBC surface antigens in a two-site “sandwich-type”approach is an important design component of the present invention.Until now, the state of the art in fetal cell isolation has generallyfocused on multi-steps cell enrichment approaches that are relativelycomplex, have insufficient sensitivity, and are prone to poor yieldand/or significant cell loss and give inconsistent results. In addition,reported approaches generally target fetal cell markers that arenon-specific and/or subject to altered expression as target cellsundergo maturation processes (17, 18, 20-28).

In one embodiment, the present invention incorporates the specific fetalNRBC recognition property of a new monoclonal antibody (antibody 4B9described in U.S. Pat. No. 7,858,757 B2) combined with a two-site“sandwich-type” design providing a reliable method for highly efficientand convenient isolation of fetal NRBC from maternal blood. In thisnovel design, 4B9 antibody, recognizing a specific cell surface epitope,is coated onto a suitable reaction surface and the specifically capturedfetal NRBC are detected using 4B9 antibody covalently or non-covalentlycoupled to a readily quantifiable/detectable label. Because of theintrinsic flexibility of the sandwich-type cell isolation approach,allowing for sequential process of cell capture, cell wash to removeunbound cells, and cell detection, a specific capture antibody such as4B9 can be alternatively paired with one or more detection antibodyagainst specific (example; anti-epsilon globulin) or non-specific(example; glycophorin-A, i-protein, CD47) fetal NRBC identifiers.

Combinations of capture/detection antibodies that either bind to thesame or different fetal NRBC surface antigens, such as 4B9/4B9 or4B9/anti-glycophorin-A antibody, add another novel dimension ofspecificity and accuracy to the technology of the present invention. Thecell capture/detection strategy provided is not limited to pair-wiseantibody combinations and can be readily configured to include one ormore capture antibodies in combinations with one or more detectionantibody against internal and/or external fetal NRBC identifiers knownto those skilled in the art.

The use of antibody-coated large surfaced flat or containedsolid-supports such as the readily available microscope slide andPetri-dish has several advantages. In addition to facilitating closercontact and providing for increased cell capture capacity and affinityindependent reaction kinetics (30), they allow for unification of thevarious required steps into a simple and continuous process that serveto minimize errors and increase consistency. This single format systemis highly advantageous as the methods of the present invention combinethe steps of cell capture, washing to remove unbound cells, and celldetection (identification) as well as analysis into a seamless platformsystem suitable to both manual and automated applications.

This unified process has recognizable operational benefits as multi-stepapproaches requiring different formats for cell enrichment,identification and/or isolation are prone to cumulative errors and cellloss, thus making development of consistent cell isolation methods withhigh efficiency difficult if not impossible (18). The present inventioncan be offered as a standalone antibody-based fetal NRBC isolation kitfor general downstream use, or be provided as a complete fetal NRBCisolation and analysis kit. The flexibility of design, allowingintegration of cell isolation platform with antibodies of differentspecificity in a sandwich-type cell capture/detection approach providesbroad applicability of the present invention to isolation and analysisof any circulating rare cell of research and/or clinical interest.

Materials and Methods Patient Population and Sample

Peripheral blood was collected from first trimester pregnancies between8 to 12 weeks of gestation (age 22-45) and from ultrasound confirmedsecond trimester male pregnancies. Blood samples were also collectedfrom nonpregnant women. Samples from pregnant and non-pregnant womenwere obtained from Dr. Jonathan Herman, Long Island Jewish MedicalCentre, NY. Specimens from male subjects were obtained from volunteeringstaff at KellBenx, Great River, N.Y. All specimens were collected inEDTA containing blood collection tubes after obtaining informed writtenconsent from blood donors. All blood samples were used within 24 hoursof collection.

Materials

Horseradish peroxidase (HRP) and streptavidin were obtained from ScrippsLaboratories, San Diego, Calif. Sulfo-NHS-LC-LC biotin,Sulfo-NHS-SS-Biotin, NHS-PG12-Biotin, and NHS-SS-PG12-Biotin; disulfidebond breakers, Dithiotheritol (DTT), and TCEP Solution; Goat anti-mouseIGM(u), Rabbit anti-mouse IGM(u), and Goat anti-Mouse IGM, Fab₂; FCreceptor blocker were obtained from ThermoFisher Scientific(www.Thermofisher.com). EPS Microarray microscope glass slides,Superfrost Gold microscope glass slides, Screw cap slide holders; Fisherbrand 100 mm and 60 mm Petri dish, and Flat bottom 6 well non-tissueculture plates were from ThermoFisher.

Dynabead® biotin binder magnetic beads coated with streptavidin;CELLectin Biotin Binder kit, involving magnetic beads coated withstreptavidin via a DNA linker to provide a DNase cleavable site forrelease of cells bound to a biotinylated anti-cell antibody; andDynabeads® FlowComp Flexi, Part A and Part B, kit involving magneticparticle coated with modified streptavidin, a DSB-X biotin antibodylabelling kit, and a D-biotin-based releasing agent for release of cellsbound to a DSB-X biotinylated anti-cell antibody were obtained fromInvitrogen (www.invtrogen.com). Heat inactivated fetal bovine serum,RPMI medium 1640, D-PBS without calcium or magnesium, and purified mouseIgM were from Invitrogen.

EasySep® human biotin positive cell selection kit, involvingdextran-coated magnetic nanoparticles using bispecific tetramericantibody complex (TAC), that recognizes both dextran and the biotinmolecule attached to the anti-cell antibody was obtained from StemCellTechnologies (www.stemcell.com). SuperEpoxy® glass slides were obtainedfrom Arrayit Corporation (Sunnyvale, Calif. 94089). Surface activatedNexterion® glass slide H and P were obtained from SCHOTT North AmericaInc., Louisville, Ky. 40228.

Mouse IgG solution, Mouse serum, Goat IgG solution, and Goat serum wereobtained from Equitech-Bio, Inc., Kerrville, Tex. 78028.Tetramethylbenzidine (TMB) microwell peroxidase substrate system wasfrom Neogen Corporation, Lexington Ky. FITC (fluoresceinisothiocyanate), AMCA (7-amino-4-methylcoumarin-3-acetic acid), AlexaFluor® 350, and DyLight350 were from Invitrogen, and Thermo Scientific.TO-Pro for nuclei staining was obtained from Invitrogen. Commercialantibodies against CD36, CD71, and glycophorin-A were from Invitrogen.Antibody recognizing fetal epsilon globulin was from FitzgeraldIndustries International (www.Fitzgeral-fii.com). Antibodies purchasedpre-labelled with the detection probe or labelled in-house usingmanufacturer's instructions.

Reagents and kit for performing FISH (fluorescence in situhybridization) were form AneuVysion (www.abbottmolecular.com). All otherchemical reagents were of highest quality and were obtained from SigmaChemical Co., St. Louis, Mo., or Amresco, Inc., Solon, Ohio. Eight wellmicrotitration (microwells) strips and frames were products of GrinerInternational, Germany.

Antibodies

The hybridoma clone that secretes Monoclonal antibody 4B9 has beendeposited with the Deutsche Sammlung von Mikroorganismen andZellkulturen GmbH (DSMZ, Braunschweig, Germany) under the accessionnumber DSM ACC 2666.

Anti-fetal NRBC antibodies may be monoclonal, polyclonal or any otherfetal NRBC binder combinations. Suitable two-site “sandwich-type” cellcapture and detection and/or identification binding partners with broador exclusive binding affinity for various surface and/or internalantigenic determinant expressed by rare cells such as fetal NRBC can beused in the methods of the present invention. These can be also based onpair-wise selection of commercially available antibodies and reportedexpression and specificity. For example, the list of commerciallyavailable and proprietary antibodies that recognize fetal NRBC includesbut is not limited to antibodies reacting with cluster of cell surfacedifferentiation markers (CD) such as CD36, CD71, CD47, as well asantibodies against glycophorin-A, i-antigen, and ε-globulin.

The method for preparation of monoclonal as well as polyclonalantibodies is now well established [Harlow E. et al., 1988 Antibodies.New York, Cold Spring Harbor Laboratory]. Monoclonal antibodies can beprepared according to the well established standard laboratoryprocedures “Practice and Theory of Enzyme Immunoassays” by P. Tijssen(In Laboratory Techniques in Biochemistry and Molecular Biology, Eds: R.H. Burdon and P. H. van Kinppenberg; Elsevier Publishers BiomedicalDivision, 1985), which are based on the original technique of Kohler andMilstein (Kohler G., Milstein C. Nature 256:495, 1975). Antibodies canalso be produced by other approaches known in the art, including but notlimited to immunization with specific DNA.

A particular consideration for pair-wise antibody selection is theability of the capture antibody, coated onto a solid-support, and thedetection antibody, conjugated to a detection label, to bindsimultaneously to the same or different determinants expressed on thesurface of fetal NRBC differentiating biomarkers. The fetal NRBCcapture/detection binding partners can also include antibody fragments,chimeric antibodies, humanized antibodies, antibody and cell bindingpeptides developed by re-engineering of existing antibodies, syntheticantibodies, synthetic binders, recombinant antibodies as well as peptideand protein binders selected by screening phage display libraries andother similar expression and selection systems.

Polyclonal or monoclonal antibodies can be raised by standard well knownmethods against whole fetal NRBC, against fetal NRBC sub-fractions suchas isolated cell membranes, isolated nucleus and isolated plasmamembrane; against fetal NRBC progenitor and/or fetal stem cells; againstfetal cell soluble proteins, peptides, and glycoprotein; against otherrelevant antigenic molecules and known or yet to be discoveredstructures. Other suitable antigens for immunization include, but arenot limited to synthetic peptides, designer molecules, and fetal NRBCantigen-mimicking structures. Antibodies can be raised in variousspecies including but not limited to mouse, rat, rabbit, goat, sheep,donkey, horse and chicken using standard immunization and bleedingprocedures. Animal bleeds or hybridoma cell culture media can befractionated and purified by the well established and widely availablestandard antibody purification schemes.

Examples Cell-Free 4B9 ELISA

The 4B9 ELISA of one embodiment of the present invention involves director indirect coating of 4B9 antibody onto solid-supports, detecting bound4B9 using goat ant-mouse IgM (Fab)₂ labelled with the enzyme horseradishperoxidase (HRPO), and colorimetric quantification of the reaction usingHRPO substrate Tetramethylbenzidine (TMB). Whereas in direct coating,4B9 was detected by incubation with the detection anti-mouseantibody-HRPO conjugate (0.025 ug/mL of assay buffer; 10 mM NaPO₄, pH7.4, containing 8.8 g NaCl, 0.5 g BSA, 0.5 mL Tween-20, and 2.5 mLproclin per litre), the indirect coating involved pre-incubation ofunlabeled or biotinylated 4B9 (10 ug/mL) with second antibody orstreptavidin coated support, respectively.

In general, comparative evaluation of microtitration wells, magneticparticles in test tubes, and glass slides in 16-well partitionedassemblies (Grace Bio labs) were performed under nearly identicalconditions of antibody volume (50 uL/reaction), assay buffer volume (100uL/reaction), and 60 min shaking or mixing incubation. After four timeswash with ELISA wash buffer (0.05 mM Tris, pH 7.4, containing 0.05%Tween-20) and addition of the detection antibody-HRPO conjugate (100uL/assay), each reaction support was washed as above and incubated for10 minutes with 100 uL of TMB substrate. In the case of magneticparticles and partitioned glass slides, 100 uL of reacted substrate wasthen transferred into clean microtitration wells. This was followed byaddition of 100 uL/well of stopping solution (0.2 M Sulphuric acid) toall wells and comparative dual wavelength absorbance measurement at 450and 620 nm. Optimization and evaluation of antibody coated ontoPetri-dish or six well tissue culture plates was as above, except largervolumes of the various reagents were used.

General procedures for coating antibodies or streptavidin ontomicrotitration wells or other supports were as previously described(31-34). Magnetic particles obtained commercially were mostly coatedwith streptavidin or anti-mouse IgM. The beads (25 uL containing 1×10⁷beads) were washed as per manufacturer instructions and incubated withincreasing concentrations of biotinylated 4B9 or unlabeled 4B9 antibody.Bead-bound antibody was resuspended in 100 uL of the assay buffer andincubated with 100 uL of the anti-mouse IgM-HRPO conjugate and thereaction was quantified as described above. Commercial glass slides thathad been functionalized for covalent or non-covalent protein labellingwere coupled with antibody or streptavidin according to previouslypublished methods (31-34) or manufacturer's instructions. For labellingthe entire activated surface, the slides were secured into one-wellslide assembly (Grace Bio-lab) and incubated with 4-mL/slide of thecoating antibody or streptavidin. For comparative testing, the slideswere partitioned into 16-well assemblies and to each well added 100 uLof increasing concentrations of biotinylated 4B9 or unlabeled 4B9antibody. After incubation and washing, 100 uL/well of the anti-mouseIgM-HRPO conjugate was added and the reaction quantified as describedabove. Antibody or streptavidin coating onto Petri-dish or six welltissue culture plates was as above, using appropriate volumes of thecoating and blocking buffers. For comparative evaluations, the widelyused clear eight well-strip plates (Griner Bio-One, Microclon 600 highbinding), coated with streptavidin or 2nd antibody, were similar assayedfor binding to 4B9 as described for magnetic particles and glass slides.

Protocols for coupling of the detection antibody to HRPO was performedas described (31-34). The coupling reaction involved activation of theenzyme with Sulfo-SMCC and its subsequent reaction with the detectionanti-mouse antibody, which had been activated by 2-iminothiolane.Coupling of antibodies to biotin was performed according to standardprocedures (34).

This simple and quantitative ELISA system was subjected to comparativeevaluation of 4B9 binding characteristics and (a) widely usedliquid-phase magnetic particles, (b) widely used microtitration wells,and (c) to large-surfaced solid-phase supports such as microscopeslides, Petri-dish, and large six-well tissue culture plates. The ELISAfacilitated rapid development, optimization, and comparative evaluationsof numerous aspects important to evolution of the disclosed cellisolation technology and platform, which would have been otherwiseextremely difficult if not impossible to ascertain. The latter includedbut is not limited to (1), comparative assessment of non-covalent(passive) or covalent binding properties of 4B9 at variousconcentrations (0.5-40 ug/mL) and in various coating buffers (phosphate,pH 6.5, phosphate, pH 8.0, borate, pH 8.5, carbonate, pH 9.1) to varioussupports (2), non-covalent binding properties and 4B9 binding capacityof anti-species antibodies (e.g., goat anti-mouse IgM) coated at variousconcentrations (1-40 ug/ml), in above buffers, to various supports (3),binding of increasing amounts of 4B9 antibody labelled with fivedifferent biotin-labelling agents (see materials) in various molarratios (10-400 mole biotin/mole antibody) to various commercial and/orin-house manufactured streptavidin coated supports and (4), binding ofincreasing amounts unlabeled 4B9 to optimally coated second antibody(e.g., goat anti-mouse IgM) to various supports.

Cell Capture

Capture antibodies can be non-covalently coated on, covalently coupledwith, or linked to various solid phase supports using standardnon-covalent or covalent binding methods. The solid support can be inthe form of test tube, beads, microparticles, filter paper, variousmembranes, glass filters, glass slides, glass or silicon chips, magneticnano- and microparticles, magnetic rods, magnetic sleeves as well asmicrofluidic, microelectronic, and micromagnetic mechanical cellseparation systems and devices, various glass or plastic chambers, orother materials and supports known in the art. The latter can alsoinclude various medical devices for insertion into patient circulationfor in-vivo collection of cells.

Cell Release

Supermagnetic micro- and nano-particles coated with specific antibodies,with avidin, streptavidin, or their modifications, or with anti-speciesantibodies as well as with affinity binders such as protein-A orprotein-G have dominated the field of cell isolation. These approachesgenerally involve magnetically labelling antibodies of desiredspecificity, incubating the magnetized antibody with target sample(e.g., maternal blood), and retaining target cells (positive selection)or unwanted cells (negative selection) when a strong magnet is placedoutside the incubating chamber (18).

Although the immunomagnetic cell sorting (MACS) methods are relativelyconvenient, inexpensive, and easy to operate, the technology is reportedprone to several significant limitations including inefficiency, pooryield, cell entrapments, bead-to-bead interaction or aggregations, celldamage, inconsistency, and autofluoresence interferences withimmunostaining methods. To improve performance, several samplepre-treatment enrichment methods (filtration, density gradientseparation, differential cell lysis or sized based separation with orwithout negative immunoselection) that are also prone to significanterrors, cell loss, and inconsistency have been employed (18, 23, 29).

Strategies have been developed to dissociate the capture cells frommagnetic particles by incorporating a cleavable linkage between theparticles and the employed antibody. Alternative strategies involvingdisplaceable biotin labels or antibody detachment by competingantibodies have also been developed and are commercially available(Invitrogen; Miltenyi Biotech; Stem cell technologies).

Antibody 4B9 was used in association with cleavable (disulfide-linked)biotin (e.g., Sulfo-NHS-SS and NHS-SS-PG12-Biotin), DXB-X-biotinincluded in the Invitrogen Biotin binder kit, and in association withthe Invitrogen CELLectin kit. After coupling 4B9 to streptavidin-coatedwells or magnetic particles provided in corresponding kits, thesolid-support-4B9 complexes were incubated for 30 minutes withincreasing concentrations of the cleaving or displacing agent. Solidsupports were then washed and the reaction developed using Cell-Free 4B9ELISA described above. The efficiency of the antibody releasing systemwas readily determined by comparing signals remaining in the treatedtests vs. total signal generated in untreated control tests.

Detection and Identification of Captured Cells

Antibody used to detect captured cells can serve the dual purpose ofcell detection as well as identification. The latter is possibleparticularly by use of two-step immunoreaction protocols (31-35) inwhich capture of target molecule by a specific antibody is followed by awashing step, to remove unattached molecules, and detection ofspecifically captured molecule by a specific and/or non-specificdetection antibody. The fact that in a two-step capture/detectionformat, specifically captured blood molecules can be detected bynon-specific or broadly reactive detection antibodies (36), is furthertestament of advantage and flexibility of the methods of the presentinvention as specifically captured cells can also be accurately detectedusing a non-specific cell detection antibody.

Application of the above concept to fetal NRBC isolation was explored bycapturing fetal cells from maternal blood, washing to remove unattachedcells, and detecting captured cells with a specific and/or non-specificdetection antibody. In a series of parallel two-step “sandwich-type”experiments, fetal NRBC captured by solid-phase 4B9 antibody were, afterwashing, detected by labelled 4B9 or by another labelled antibodybroadly recognizing surface markers expressed on various fetal and evenmaternal blood cells (e.g., antibody reactive with GPH-A, CD36, CD71, orCD47). After a second washing step, the isolated cells were also stainedfor epsilon globulin and analyzed microscopically. In all cases,isolated cells stained with the detection antibody were also stain forepsilon globulin, confirming the specificity of the technology andidentity of the specifically captured/detected cells as fetal primitiveNRBC. Because of specificity epsilon globulin for primitive fetal cellsonly (17, 20, 22) and specificity of 4B9 for both primitive anddefinitive cells, it is possible to detect fetal cells not stained forepsilon globulin. However, primitive NRBCs are the predominant celltypes in first trimester maternal blood until 12 weeks gestation (20).

The concordance of surface staining of 4B9-captured fetal cells by thedetection antibody and cytoplasmic staining by epsilon globulin antibodyhas significant implications. This observation for the first timedemonstrates and confirms that it is possible to efficiently capture,detect, and identify circulating rare cells using a simple two-stepsandwich-type method to provide a highly sensitive, specific, andreproducible immunoassay for quantification of circulating bloodmolecules.

The detection antibody can be either directly coupled to a reportermolecule, or detected indirectly by a secondary detection system. Thelatter may be based on any one or a combination of several differentprinciples including but not limited to antibody labelled anti-speciesantibody and other forms of immunological or non-immunological bridgingand signal amplification systems (e.g., biotin-streptavidin technology,protein-A and protein-G mediated technology, or nucleic acidprobe/anti-nucleic acid probes and the like). The label used for director indirect antibody coupling may be any detectable reported molecule.Suitable reporter molecules may be those known in the field ofimmunocytochemistry, molecular biology, light, fluorescence, andelectron microscopy, cell immunophenotyping, cell sorting, flowcytometry, cell visualization, detection, enumeration, and/or signaloutput quantification known to those skilled in the art.

Examples of suitable labels include, but are not limited tofluorophores, luminescent labels, metal complexes, radioisotopes,biotin, streptavidin, enzymes, or other detection labels and combinationof labels such as enzymes and a luminogenic substrate. Example ofsuitable enzymes and their substrates include alkaline phosphatase,horseradish peroxidase, beta-galactosidase, and luciferase, and otherdetection systems known in the art. More than one antibody of specificand/or non-specific nature might be labelled and used simultaneously orsequentially to enhance cell detection, identification, and/orspecificity. In such application, each antibody is labelled withdifferent label known in the art of having different and differentiatingsignal output property, detection signal, spectra, or fluorescentemission spectra. Example of suitable labels widely used in the field ofimmunocytochemistry and cell detection microscopy include, but are notlimited to FITC (fluorescein isothiocyanate) AMCA(7-amino-4-methylcoumarin-3-acetic acid), Alexa Fluor 488, Alexa Fluor594, Alexa Fluor 350, DyLight350, phycoerythrin, allophycocyanin. Stainsfor detecting nuclei include Hoechst 33342, LDS751, TO-PRO and DAPI.

Fetal NRBC Isolation Immunoassay

The fetal NRBC isolation assay according to one embodiment of thepresent invention provides a two-site “sandwich-type” immunoassay,performed in a two-step “sequential” process of a first incubation step,washing, and a second incubation step. In the assay, an appropriatevolume of washed whole blood was added to directly or indirectly (viaStreptavidin or second antibody) 4B9 pre-coated dish (10 mL/dish),six-well tissue culture plates (3 mL/well), or glass slide (10 mL/2slides in plastic slide containers) and incubated for 60 min withcontinuous gentle mixing. After incubation, blood was removed by gentleaspiration, and the incubating chambers or slides were washed five timeswith appropriate volume of PBS (GIBCO DPBS). This was then followed byincubation as above with appropriately diluted detection antibody 4B9 orany other appropriately labelled fetal NRBC identifying detectionantibody. After incubation and washing as above, the isolated cells areready for further processing. Examples of such processing include butare not limited to fixing, permeabilizing, and immunoprobing for fetalNRBC indentifying markers such as epsilon globulin as well as nuclearcounterstaining according to established and reported procedures (20,22, 23). Alternatively, the cells can be subjected to chromosomalanalysis by FISH (fluorescent in situ hybridization) for indication ofspecific chromosomal and genetic abnormality using established methods(21, 37) and commercially available reagents from suppliers e.g.AneuVysion (www.abbottmolecular.com).

The cells can be also removed by micromanipulation or by scraping theentire cell population from the substrate or support for downstreamchromosomal, molecular, and gene sequencing technologies according toreadily available and well known methods. The latter include but are notlimited to FISH for aneuploidies (21, 18, 13, X, and X), QF-PCR foraneuploidies, Array-CGH, or genome sequencing for genetic mutations orpolymorphisms using the widely available commercial reagents, kits, andinstrumentations from several commercial companies. Examples includeBioReference Laboratories, Abbott's Aneuvysion, GenomeDX, Gen-Probe,Signature Labs, Ambry Genetics, Invitrogen, Beckman, Bio-Rad, Moleculardevices, Applied Biosciences and Illumina Inc.

Whole blood (maternal blood, non-pregnancy bleed, male blood) collectedin EDTA tubes were centrifuged at 2000 rpm (Beckman Allegra) for 10minutes. The plasma fraction was discarded and the cell layer resuspend,at 1+2 volume ratios, in buffer #1 (Ca²⁺ and Mg²⁺ free PBS with 0.1%BSA, 5 mM EDTA, 2.5% FC receptor blocker), mixed gently, and centrifugedas described above. The cell layer was washed twice again andresuspended to original blood volume prior to use.

Solid supports were coated with antibody or protein at 10 ug/mL ofcoating buffer (50 mM Sodium Borate, pH 8.5) using published methods(31). In brief, supports were incubated with an appropriate volume ofthe coating capture antibody or protein solution overnight at roomtemperature. Coated supports were then washed once with support washbuffer (10 mM KPO4, pH 7.4) and incubated for 1 hr in appropriate volumeof the blocking solution (wash buffer containing 1% BSA). Thesolid-supports were washed once with the wash buffer prior to use orstored at 4° C. for up to 1 week in the blocking buffer. Antibodies orproteins can be coated onto the various supports and provided in a readyto use dry format. Coupling of detection 4B9 antibody and other suitabledetection and/or confirmatory antibodies to various fluorescent probes(example FICT) can be readily performed using reagents and kitsavailable from several commercial companies such as Invitrogen(www.invitrogen.com) and Thermo Scientific (www.piercenet.com).

Cell Staining and Analysis Methods

Methods for immunofluorescence, immunoenzymatic, and cytochemicalstaining of cell membrane, cytoplasm, and organelles are now wellestablished and widely available commercially. This includes fixing,permeabilizing, and probing for fetal NRBC indentifying markers such asCD antigens, GPH-A, I-antigen, and fetal epsilon globulin as well asnuclear counterstaining according to established and reported procedures(20, 22, 23). Technologies for chromosomal staining by FISH are wellestablished (21, 37) and commercial reagents and kids widely available[AneuVysion (www.abbottmolecular.com)]. Technologies for downstreamgenetic and/or molecular testing are also widely available. The latterinclude but not limited to QF-PCR for aneuploidies, Array-CGH, or genomesequencing for all genetic malformations using the widely availablecommercial reagents, kits, and instrumentation.

In one embodiment of the present invention, 4B9 captured cells werestained for fetal epsilon globulin using a monoclonal antibody labelledwith DyLight350 or Alexa Fluor 350 according to established methods. Inbrief, after completing the washing step, the capture cells were fixedwith cold methanol (−20° C.) for 10 min and with 4% formalin for 10 minat room temperature. After washing, cells were permeabilized) with 0.1%Triton X-100 in PBS (5 min at room temperature), blocked with 1% BSA inPBS and incubated with labelled anti-epsilon globulin antibody in thesame buffer (2 hrs at room temperature or overnight at 4° C.). Forcounterstaining of cell nuclei, appropriate volume of a 4 uM solution ofTO-PRO-1 in PBS was added, the incubating reaction covered with foil,and incubated for 10 min at room temperature. Cells where then washedonce with PBS prior to analysis. Chromosomal FISH was done as perinstruction of manufacturer reagents and kits (AneuVysion, seewww.abbottmolecular.com).

Data Analysis

Colorimetric ELISA results were analyzed using the data reductionpackages included in the Labsystems Multiskan microplate ELISA reader(Labsystems, Helsinki, Finland). Cell images were captured by microscopy(Nikon Eclipse 50i or Nikon Eclipse TI-S) using QI-CLICK monochromecamera and NIS Elements software. Enumeration of isolated cells was doneby manual scanning and recording. All plots and statistical analysiswere performed by SigmaPlot® and SigmaStat® (Superior PerformingSoftware Systems Inc, Chicago Ill. 60606-9653).

Results Cell Free 4B9 ELISA

In the 4B9 ELISA, 4B9 antibody can be directly or indirectly (viastreptavidin or anti-species antibody) coupled to various supports andthe binding capacity and efficiency can be rapidly and quantitativelycompared to existing and an antibody capture substrate such asmicrotitration wells.

In one embodiment, the cell-free 4B9 ELISA employs a two-stepnoncompetitive immunoreaction in which covalent or non-covalent bindingof 4B9, streptavidin, or second antibody to supports was comparativelyand colorimetrically quantified by interaction of bound 4B9 with thedetection goat anti-mouse IgM labeled with HRPO. The optimized protocolwas established by investigating the effects of various parameters andtechnical manipulations on analytical performance (31-36). The bestperformance obtained with coating antibody or protein concentration of5-10 ug/mL, detection antibody concentration of 0.2-0.5 ug/mL, and 30-60min room temperature incubations, depending on whether direct orindirect (streptavidin or second antibody) coating systems were beingevaluated. After washing, and 10 min incubation with TMB substrate, thereaction was stopped by addition of equivalent volume of the stoppingsolution followed by absorbance readings at 450 nm. Representativeresults of parallel evaluation of streptavidin-coated liquid-phasemagnetic particles vs. solid-phase microtitration wells for theirrelative effectiveness in binding biotinylated 4B9 antibody is depictedin FIG. 1. Surprisingly, and in contrast to theoretical expectations(29), solid-phase microwells showed consistently better 4B9 bindingkinetics and capacity. Results were similar when 4B9 was coated directlyor via second antibody interface to comparative liquid-phase vs.solid-phase supports (data not shown).

Cell Capture Platforms and Application to Cell Isolation

Large-surfaced solid-supports (glass slides and Petri-dish) were coateddirectly with 4B9 antibody or via streptavidin (biotinylated 4B9) orsecond antibody (unlabeled 4B9) interface. The solid-phase supports werethen comparatively evaluated for their efficiency in isolating fetalNRBC from first trimester maternal blood. In these trials, two sets ofseparate experiments were performed.

Experiment #1

Maternal blood from four first trimester pregnancies (30 mL totalvolume) were washed, resuspended to original volume, and pooled. Equalvolumes of pooled blood (10 mL) were added to each of three Petri dishescoated with 4B9 antibody old lot (PD#1; 4B9-O), 4B9 antibody new lot(PD#2; 4B9-N), or anti-mouse IgM coupled with 4B9-O antibody (PD#3).After 60 minutes incubation with gentle mixing on a flat orbital shaker,cells were washed 5× with PBS and stained for detection of fetal epsilonglobulin. From this first trimester pooled blood, the total number ofisolated fetal cells stained positively for epsilon globulin in PD#1,PD#2, and PD#3, were 909 (91/mL of blood), 1192 (119/mL of blood), and580 (58/mL of blood), respectively (See Table 1).

TABLE 1 Isolation of Fetal NRBC from Pooled First Trimester MaternalBlood Hb Fixed No. of Solid Capture Pooled Blood Pretreatment/ detection& Perme- Cells Support Ab Blood Vol/Test RBC lysis antibody abilizedIsolated PD#1 4B9(O) 1^(st) 10 mL no AMCA yes 909 Trimester mAB humanepsilon Hb PD#2 4B9(N) 1^(st) 10 mL no AMCA yes 1192 Trimester mAB humanepsilon Hb PD#3 2nd-Ab- 1^(st) 10 mL no AMCA yes 580 4B9(O) TrimestermAB human epsilon Hb

Representative images of epsilon-positive cells isolated by the variousplatforms are shown in FIG. 2, and FIG. 3. As epsilon globulin isreportedly a highly specific primitive fetal NRBC identifier (20, 22,39), these findings disclose for the first time that circulating numbersof fetal cells in maternal blood are many fold higher than previouslyknown, believed, or reported. The number of isolated fetal NRBC cells inthe range of 60-120 cells per mL of maternal blood is an unprecedenteddiscovery as the previously reported numbers are generally in the rangeof 1-2 cells/mL (18, 21-23, 27-29). In terms of platform constructionoptions, the data obtained show that direct antibody coating (PD#1 andPD#2) has significantly higher cell capturing capacity than the secondantibody (PD#3) coating approach (See Table 1).

Petri dishes (PDs) were coated with 4B9 Antibody (Ab) old lot (PD#1),new lot (PD#2), or with 2nd-Ab (anti-mouse IgM) followed by incubationwith unlabeled 4B9 antibody. Peripheral blood from 4 different firsttrimester pregnancies (about 30 mL) were washed, pooled, and used forfetal cell isolation in equal volumes. Isolated cells were stained forepsilon hemoglobin and counted manually using an inverted microscope.

Experiment #2

In the second experiment, five different glass microscope slides fromthree different manufacturers were first coated directly as well asindirectly with 4B9 and analyzed comparatively for their bindingcapacity with Cell-Free 4B9 ELISA. Glass slides demonstrating higherbinding capacity were coated with biotinylated 4B9 via streptavidincoating (Slide #1), or unlabeled 4B9 via second antibody (Slide #2).Blood from another first trimester pregnancy (8 ml) was washed,resuspended to original volume, and incubated with slide #1 and slide #2as above. The isolated cells were subsequently stained for fetal epsilonglobulin and nuclei with TO-PRO. Microscope glass slides were coatedwith streptavidin or 2nd antibody followed by incubation withbiotinylated 4B9 antibody (SA; Slide#1) or untouched 4B9 antibody(Slide#2). Peripheral blood from a single first trimester pregnancies(about 8 mL) was washed and used in equal volumes. Isolated cells werestained for epsilon hemoglobin and counter stained with TO-PRO. Isolatedcells were counted manually using an inverted microscope. The numbers ofepsilon-positive fetal cells isolated are summarized in Table 2 (seebelow) and representative cell images acquired microscopically aredepicted in FIG. 4.

Consistent with previous findings, this blood sample also containedunprecedented high numbers of fetal cells that were readily isolated bythe present invention. The number of epsilon-positive cells isolated bySlide #1 and Slide #2 were 98 (25/mL of maternal blood) and 203 (51/mLof maternal blood), respectively.

TABLE 2 Isolation of Fetal NRBC from a First Trimester Maternal Blood HbNo of No of TO- Solid Capture Blood Counter- detection double PROpositive Support Ab Blood Vol/Test stain antibody positive only Slide#1SA/Biotin- 1^(st) 4 mL TO-PRO AMCA 98 7 4B9(O) Trimester mAB humanepsilon Hb Slide#2 2nd-Ab- 1^(st) 4 mL TO-PRO AMCA 203 49 4B9(O)Trimester mAB human epsilon Hb

The observation that in these experiments, the number of isolated cellspositive for TO-PRO but negative for epsilon was 7 by Slide #1(non-specific binding of 7.1%) and 49 by Slide #2 (non-specific bindingof 24%) suggests differential susceptibility of the various platforms tonon-specific binding to nucleated cells that may be of maternal origin.Alternatively, some captured cells positive for TO-PRO only may be fetalNRBC cells that have lost epsilon globulin expression. Reportedly,definitive fetal erythroblasts that are potentially captured by 4B9antibody are believed to be epsilon globulin negative (17, 22).

In comparison to results in Table 1, the lower number of fetal cellsisolated by glass slides (Table 2) may be in part due to using smallervolume of maternal blood (4 mL vs. 10 mL), substantially smaller bindingsurface area of the glass vs. Petri-dish (by about 5 fold), and the factthat a different pregnancy sample was used. Simple extrapolationsuggests that the number of fetal cells isolated by the two platformswould have been closer if similar sample volume and surface areas hadbeen employed. However, the unprecedented fetal NRBC isolationsensitivity of 76-97% and isolation yield of 25-120 cells per mL ofblood is significant achievement of a seemingly impossible task (17-18,20-28). As such, the technology of the present invention fulfills thelong-felt unmet need for a simple, reliable, and cost effective cellisolation technology for successful implementation of reliablenon-invasive prenatal diagnostic tests.

Cell Capture Platform and Application to Fish

Blood (5 mL) from an ultrasound confirmed second trimester malepregnancy was washed and incubated with a glass slide directly coatedwith 4B9 antibody as described. Isolated cells were then processedaccordingly and probed for detection of X and Y chromosome by FISH. Asexpected, the isolated fetal cells were specifically stained for both X(green) and Y (red) chromosomes. FIGS. 5 and 6 depict acquired images ofthe isolated cells, further confirming specificity and isolationefficiency of the present fetal cell isolation technology.

DISCUSSION

Despite the potential of circulating fetal NRBC cells as reliablepredictors of fetal as well as maternal health and disease, progress intheir isolation and analysis has been severely hampered by lack ofefficient, simple, and reliable cell isolation methods. This persistentvoid has been consistently reflected in cumulating reports and, thus,scientific support that fetal NRBC in maternal blood are extremely rareand as such their successful isolation has been cited as formidableanalytical and technical barrier (17, 18, 20-28). The novel discoveryenabled by the use of the methods of the present invention thatcirculating numbers of fetal isolated from maternal blood are present insubstantially higher numbers than ever expected is a strong testament ofthe unmet and differentiating efficiency of the present invention.

Based on theoretical considerations and new insight from a recent report(38), there may indeed be significantly higher numbers of fetal cellsentering maternal circulation that have been previously thought. As thelatter has been now demonstrated by the methods of the presentinvention, the long standing position on rarity of circulating fetalNRBC cells appears to be a direct reflection of inadequacies andinefficiencies of currently available technologies. The presentinvention has the potential to revolutionize the field of rare cellisolation in general and of fetal NRBC in particular by effectivelyfulfilling the current unmet needs for simple, reliable, and highlyefficient rare cell isolation platform. The latter includes theconsistent and highly efficiency isolation of rare cancer cells, an areathat has been plagued by similar analytical and technical challenges(40).

In contrast to the inefficient multi-step approaches and strategiesavailable to date, the present invention combines all of the requiredsteps into a simple and seamless “one-step process” of fetal cellisolation. This novel approach is based on interfacing a convenient cellisolation platform such as glass slides, plastic containers, chambers,or wells with target cells of interest using a capture antibody againstwell defined cell surface biomarkers. Detection of specifically capturedand isolated cells is then mediated by a detection antibody labelledwith a readily detectable and/or quantifiable detection moiety.

The antibody-mediated sandwich-type cell isolation methods of thepresent invention have the novel and additional advantages of permittingthe use of a single antibody for cell capture as well as detection, orcombining a specific and/or non-specific capture antibody with one ormore detection antibody that may be a reliable, though non-specific,identifier of target cells of interest. Because of its high cellisolation sensitivity and efficiency, the technology of the presentinvention is also applicable to development of quantitative methods formonitoring relative changes in the number of circulating cells that areknown to occur in conditions such as Down syndrome, maternalcomplication of pregnancy such as preeclampsia, or a variety of humancancers (40). The quantitative cell isolation technology of the presentinvention, based on single-step isolation, detection, and counting thenumber of isolated cells per unit of the starting blood volume hasadditional advantages of simplicity and cost effectiveness.

The design of the technology of the present invention, focusing onsolid-phase platforms that accommodate large surface area facilitatecloser contact and thus enhanced capturing capacity and interaction ofthe solid-phase antibody with rare target cells of interest. Thisdesign, allowing the use of excess antibody planted on large bindingsurfaces has the advantage of promoting affinity independentinteractions, enhanced reaction kinetics, and easy separation fromunbound cells, while avoiding problems encountered by the commonly usedmicroparticle-based cell separation strategies. Isolated rare cells canbe then counted, analyzed in situ, and/or removed for downstreammanipulation and analysis.

Each of the patents and references cited in this application are herebyincorporated herein by reference. In the event that there is aninconsistency between the teachings of one or more of the referencesincorporated herein and the present disclosure, the teachings of thepresent specification are intended. The examples provided in thisspecification are for illustration only and are not intended to limitthe invention the full scope of which will be immediately clear to thoseof skill in the art.

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1-12. (canceled)
 13. A method of detecting a rare cell in a biologicalfluid, the method comprising: (i) providing a first antibody immobilizedon a substrate, wherein the first antibody binds a first cell-surfaceantigen of the rare cell; (ii) contacting the immobilized first antibodywith a sample of biological fluid, wherein the bodily fluid comprisesthe rare cell and a plurality of other cells; (iii) incubating theimmobilized first antibody with the sample of bodily fluid underconditions suitable for binding of the first antibody to the firstcell-surface antigen of the rare cell so as to form a firstantibody-rare cell complex; (iv) washing the first antibody-rare cellcomplex to remove the unbound cells and provide an isolated firstantibody-rare cell complex; (v) incubating the first antibody-rare cellcomplex with a second antibody that binds a second cell-surface antigenof the rare cell under conditions suitable for binding of the secondantibody to the a second cell-surface antigen in order to form a firstantibody-rare cell-second antibody complex and (vi) detecting the secondantibody in the first antibody-rare cell-second antibody complex andthereby detecting the presence of the rare cell in the sample of thebodily fluid.
 14. The method of claim 13, wherein the biological fluidis blood, plasma, amniotic fluid, urine, or a suspension of cells from achorionic villus sampling (CVS) biopsy.
 15. The method of claim 13, themethod further comprising a step of washing the first antibody-rarecell-second antibody complex so as to remove unbound second antibodybetween steps (v) and (vi).
 16. The method of claim 13, wherein thefirst cell-surface antigen and the second cell-surface antigen aredifferent.
 17. The method of claim 13, wherein the cell-surface antigenand the second cell-surface antigen are the same.
 18. The method ofclaim 13, wherein the first antibody is selective for a fetal cellsurface antigen.
 19. The method of claim 13, wherein the first antibodyis for specific a fetal cell surface antigen.
 20. The method of claim19, wherein the first antibody is antibody 4B9.
 21. The method of claim13, wherein the second antibody is selective for a fetal cell surfaceantigen.
 22. The method of claim 13, wherein the second antibody isspecific for a fetal cell surface antigen.
 23. The method of claim 22,wherein the second antibody is antibody 4B9.
 24. The method of claim 22,wherein the second antibody is specific for fetal ε-globulin, CD36,CD71, or CD47.
 25. The method of claim 13, wherein the second antibodyis specific for glycophorin A or i-antigen.
 26. The method of claim 13,wherein the first antibody is specific for CD36, CD71, or CD47.
 27. Themethod of claim 13, wherein the second antibody is antibody 4B9.
 28. Themethod according to claim 13, wherein the second antibody is labeledwith a detectable label.
 29. The method according to claim 28, whereinthe detectable label is a fluorescent label, an enzyme label, aradioisotopic label, or a chemically reactive linking agent.
 30. Themethod according to claim 13, wherein the second antibody is detected bya incubating the first antibody-rare cell-second antibody complex with adetectably labeled third antibody that specifically binds the secondantibody under conditions suitable for antibody binding so as to form afirst antibody-rare cell-second antibody-third antibody complex; washingthe antibody-rare cell-second antibody-third antibody complex; detectingthe detectably labeled third antibody; and thereby detecting the rarecell in the sample.
 31. The method according to claim 30, wherein thedetectably labeled third antibody is labeled with a fluorescent label,an enzyme label, a radioisotopic label or a chemically reactive linkingagent.
 32. The method according to claim 31, wherein the enzyme label ishorse radish peroxidase or alkaline phosphatase. 33-75. (canceled)